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Pearson correlations (r) for counts per million (CPM) derived from amplicon-sequencing replicates (n=3) for transfected A) Jurkat and B) K562 cell lines.

Journal: bioRxiv

Article Title: Identification of Novel DNA Sequence Motifs that Modulate Transcription in T cells

doi: 10.1101/2025.07.08.660448

Figure Lengend Snippet: Pearson correlations (r) for counts per million (CPM) derived from amplicon-sequencing replicates (n=3) for transfected A) Jurkat and B) K562 cell lines.

Article Snippet: RNA was isolated from the cells after 24 hours, and deep amplicon sequencing was performed using the Illumina platform.

Techniques: Derivative Assay, Amplification, Sequencing, Transfection

The plot shows the number of distinct oligo-UMIs that are covered by more than one read in Jurkat and K562 cells across the three replicates. Jurkats had sufficient coverage, whereas K562 cells could have used additional amplicon sequencing.

Journal: bioRxiv

Article Title: Identification of Novel DNA Sequence Motifs that Modulate Transcription in T cells

doi: 10.1101/2025.07.08.660448

Figure Lengend Snippet: The plot shows the number of distinct oligo-UMIs that are covered by more than one read in Jurkat and K562 cells across the three replicates. Jurkats had sufficient coverage, whereas K562 cells could have used additional amplicon sequencing.

Article Snippet: RNA was isolated from the cells after 24 hours, and deep amplicon sequencing was performed using the Illumina platform.

Techniques: Amplification, Sequencing

Journal: bioRxiv

Article Title: Identification of Novel DNA Sequence Motifs that Modulate Transcription in T cells

doi: 10.1101/2025.07.08.660448

Figure Lengend Snippet:

Article Snippet: RNA was isolated from the cells after 24 hours, and deep amplicon sequencing was performed using the Illumina platform.

Techniques: Sequencing, Amplification